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Unable to install OVITO by conda

zhukun Zhou

3 Posts

#1 · July 30, 2021, 4:36 am

Quote from zhukun Zhou on July 30, 2021, 4:36 am
Hi, I encountered the same problem trying to install OVITO from conda. I installed it several days before, it works well untill yesterday. So I uninstall it and trying to reinstall. But this time it is not working. I am wondering if you can give me some advices to fix it. Thanks. The following is part of the message:

Collecting package metadata (current_repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.

Collecting package metadata (repodata.json): done

………….

Package llvmlite conflicts for:

numba -> llvmlite[version='0.20.*|0.21.*|0.22.*|0.23.*|0.24.*|>=0.25.0,<0.26.0a0|>=0.26.0,<0.27.0a0|>=0.27.0,<0.28.0a0|>=0.28.0,<0.29.0a0|>=0.29.0,<0.30.0a0|>=0.29.0|>=0.30.0,<0.31.0a0|>=0.30.0|>=0.31.0,<0.32.0a0|>=0.31.0,<0.33|>=0.33.0,<0.34|>=0.34.0,<0.35|>=0.35.0,<0.36.0a0|>=0.36.0,<0.37.0a0|>=0.33.0|>=0.33.0,<0.34.0a0|>=0.32.1|>=0.32.1,<0.33.0a0|>=0.32.0|>=0.32.0,<0.33.0a0|>=0.31.0']

anaconda==2020.11 -> llvmlite==0.34.0[build='py37h1a82afc_4|py38h1a82afc_4']

anaconda==2020.11 -> numba==0.51.2=py37hf9181ef_1 -> llvmlite[version='>=0.34.0,<0.35']

Package py-lief conflicts for:

anaconda==2020.11 -> py-lief==0.10.1[build='py38ha925a31_0|py37ha925a31_0']

conda-build -> py-lief

Package qdarkstyle conflicts for:

spyder -> qdarkstyle[version='3.0.2.*|>=2.8,<3.0|>=2.8|>=2.7']

anaconda==2020.11 -> spyder==4.1.5=py37_0 -> qdarkstyle[version='>=2.8']

anaconda==2020.11 -> qdarkstyle==2.8.1=py_0

Package helpdev conflicts for:

qdarkstyle -> helpdev[version='>=0.6.10']

spyder -> qdarkstyle[version='>=2.8,<3.0'] -> helpdev[version='>=0.6.10']

Package pbr conflicts for:

pytables -> mock -> pbr[version='>=1.3']

mock -> pbr[version='>=1.3']

Package conda-pack conflicts for:

anaconda-project -> conda-pack

anaconda-navigator -> anaconda-project -> conda-pack

Note that strict channel priority may have removed packages required for satisfiability.

Many Thanks

Hi, I encountered the same problem trying to install OVITO from conda. I installed it several days before, it works well untill yesterday. So I uninstall it and trying to reinstall. But this time it is not working. I am wondering if you can give me some advices to fix it. Thanks. The following is part of the message:

Collecting package metadata (current_repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.

Collecting package metadata (repodata.json): done

………….

Package llvmlite conflicts for:

numba -> llvmlite[version='0.20.*|0.21.*|0.22.*|0.23.*|0.24.*|>=0.25.0,<0.26.0a0|>=0.26.0,<0.27.0a0|>=0.27.0,<0.28.0a0|>=0.28.0,<0.29.0a0|>=0.29.0,<0.30.0a0|>=0.29.0|>=0.30.0,<0.31.0a0|>=0.30.0|>=0.31.0,<0.32.0a0|>=0.31.0,<0.33|>=0.33.0,<0.34|>=0.34.0,<0.35|>=0.35.0,<0.36.0a0|>=0.36.0,<0.37.0a0|>=0.33.0|>=0.33.0,<0.34.0a0|>=0.32.1|>=0.32.1,<0.33.0a0|>=0.32.0|>=0.32.0,<0.33.0a0|>=0.31.0']

anaconda==2020.11 -> llvmlite==0.34.0[build='py37h1a82afc_4|py38h1a82afc_4']

anaconda==2020.11 -> numba==0.51.2=py37hf9181ef_1 -> llvmlite[version='>=0.34.0,<0.35']

Package py-lief conflicts for:

anaconda==2020.11 -> py-lief==0.10.1[build='py38ha925a31_0|py37ha925a31_0']

conda-build -> py-lief

Package qdarkstyle conflicts for:

spyder -> qdarkstyle[version='3.0.2.*|>=2.8,<3.0|>=2.8|>=2.7']

anaconda==2020.11 -> spyder==4.1.5=py37_0 -> qdarkstyle[version='>=2.8']

anaconda==2020.11 -> qdarkstyle==2.8.1=py_0

Package helpdev conflicts for:

qdarkstyle -> helpdev[version='>=0.6.10']

spyder -> qdarkstyle[version='>=2.8,<3.0'] -> helpdev[version='>=0.6.10']

Package pbr conflicts for:

pytables -> mock -> pbr[version='>=1.3']

mock -> pbr[version='>=1.3']

Package conda-pack conflicts for:

anaconda-project -> conda-pack

anaconda-navigator -> anaconda-project -> conda-pack

Note that strict channel priority may have removed packages required for satisfiability.

Many Thanks

Uploaded files:

Ovito-install-problem.txt

Alexander Stukowski

690 Posts

#2 · July 30, 2021, 8:54 am

Quote from Alexander Stukowski on July 30, 2021, 8:54 am

Hi,

I'm not sure if this problem is really related to the ovito conda package. All the packages mentioned in the conflict report are not required by OVITO itself.

Have you already tried running conda clean --all first? Perhaps this can help to force a refresh of the downloaded package and resolve temporary conflicts. I just tested installing the ovito conda package on a Windows machine and it works normally.

If cleaning the download cache doesn't help, please run conda list and show us the current state of your conda environment. After a (successful) fresh install of the ovito package in an empty conda environment, the final state should look as follows:

(install_test1) C:\Users\astuk>conda list
# packages in environment at C:\Users\astuk\anaconda3\envs\install_test1:
#
# Name                    Version                   Build  Channel
bzip2                     1.0.8                h8ffe710_4    conda-forge
ca-certificates           2021.5.30            h5b45459_0    conda-forge
certifi                   2021.5.30        py39hcbf5309_0    conda-forge
curl                      7.78.0               h789b8ee_0    conda-forge
ffmpeg                    4.3.1                ha925a31_0    conda-forge
hdf4                      4.2.15               h0e5069d_3    conda-forge
hdf5                      1.10.6          nompi_h5268f04_1114    conda-forge
icu                       68.1                 h0e60522_0    conda-forge
intel-openmp              2021.3.0          h57928b3_3372    conda-forge
jpeg                      9d                   h8ffe710_0    conda-forge
krb5                      1.19.2               hbae68bd_0    conda-forge
libblas                   3.9.0                    10_mkl    conda-forge
libcblas                  3.9.0                    10_mkl    conda-forge
libclang                  11.1.0          default_h5c34c98_1    conda-forge
libcurl                   7.78.0               h789b8ee_0    conda-forge
libiconv                  1.16                 he774522_0    conda-forge
liblapack                 3.9.0                    10_mkl    conda-forge
libnetcdf                 4.8.0           nompi_hf689e7d_103    conda-forge
libpng                    1.6.37               h1d00b33_2    conda-forge
libsodium                 1.0.18               h8d14728_1    conda-forge
libssh2                   1.9.0                h680486a_6    conda-forge
libxml2                   2.9.12               hf5bbc77_0    conda-forge
libxslt                   1.1.33               h65864e5_2    conda-forge
libzip                    1.8.0                hfed4ece_0    conda-forge
mkl                       2021.3.0           hb70f87d_564    conda-forge
numpy                     1.21.1           py39h6635163_0    conda-forge
openssl                   1.1.1k               h8ffe710_0    conda-forge
ospray_ovito              2.5.0                h82bb817_2    https://conda.ovito.org
ovito                     3.5.3            py39h5685391_0    https://conda.ovito.org
pip                       21.2.1             pyhd8ed1ab_0    conda-forge
pyside2                   5.13.2           py39hc084194_4    conda-forge
python                    3.9.6           h7840368_1_cpython    conda-forge
python_abi                3.9                      2_cp39    conda-forge
qt                        5.12.9               h5909a2a_4    conda-forge
setuptools                49.6.0           py39hcbf5309_3    conda-forge
sqlite                    3.36.0               h8ffe710_0    conda-forge
tbb                       2021.3.0             h2d74725_0    conda-forge
tk                        8.6.10               h8ffe710_1    conda-forge
tzdata                    2021a                he74cb21_1    conda-forge
ucrt                      10.0.20348.0         h57928b3_0    conda-forge
vc                        14.2                 hb210afc_5    conda-forge
vs2015_runtime            14.29.30037          h902a5da_5    conda-forge
wheel                     0.36.2             pyhd3deb0d_0    conda-forge
wincertstore              0.2             py39hcbf5309_1006    conda-forge
zlib                      1.2.11            h62dcd97_1010    conda-forge

You can see here that packages numba and llvmlite mentioned in your conflict error report are not part of the ovito installation.

Hi,

I'm not sure if this problem is really related to the ovito conda package. All the packages mentioned in the conflict report are not required by OVITO itself.

(install_test1) C:\Users\astuk>conda list
# packages in environment at C:\Users\astuk\anaconda3\envs\install_test1:
#
# Name                    Version                   Build  Channel
bzip2                     1.0.8                h8ffe710_4    conda-forge
ca-certificates           2021.5.30            h5b45459_0    conda-forge
certifi                   2021.5.30        py39hcbf5309_0    conda-forge
curl                      7.78.0               h789b8ee_0    conda-forge
ffmpeg                    4.3.1                ha925a31_0    conda-forge
hdf4                      4.2.15               h0e5069d_3    conda-forge
hdf5                      1.10.6          nompi_h5268f04_1114    conda-forge
icu                       68.1                 h0e60522_0    conda-forge
intel-openmp              2021.3.0          h57928b3_3372    conda-forge
jpeg                      9d                   h8ffe710_0    conda-forge
krb5                      1.19.2               hbae68bd_0    conda-forge
libblas                   3.9.0                    10_mkl    conda-forge
libcblas                  3.9.0                    10_mkl    conda-forge
libclang                  11.1.0          default_h5c34c98_1    conda-forge
libcurl                   7.78.0               h789b8ee_0    conda-forge
libiconv                  1.16                 he774522_0    conda-forge
liblapack                 3.9.0                    10_mkl    conda-forge
libnetcdf                 4.8.0           nompi_hf689e7d_103    conda-forge
libpng                    1.6.37               h1d00b33_2    conda-forge
libsodium                 1.0.18               h8d14728_1    conda-forge
libssh2                   1.9.0                h680486a_6    conda-forge
libxml2                   2.9.12               hf5bbc77_0    conda-forge
libxslt                   1.1.33               h65864e5_2    conda-forge
libzip                    1.8.0                hfed4ece_0    conda-forge
mkl                       2021.3.0           hb70f87d_564    conda-forge
numpy                     1.21.1           py39h6635163_0    conda-forge
openssl                   1.1.1k               h8ffe710_0    conda-forge
ospray_ovito              2.5.0                h82bb817_2    https://conda.ovito.org
ovito                     3.5.3            py39h5685391_0    https://conda.ovito.org
pip                       21.2.1             pyhd8ed1ab_0    conda-forge
pyside2                   5.13.2           py39hc084194_4    conda-forge
python                    3.9.6           h7840368_1_cpython    conda-forge
python_abi                3.9                      2_cp39    conda-forge
qt                        5.12.9               h5909a2a_4    conda-forge
setuptools                49.6.0           py39hcbf5309_3    conda-forge
sqlite                    3.36.0               h8ffe710_0    conda-forge
tbb                       2021.3.0             h2d74725_0    conda-forge
tk                        8.6.10               h8ffe710_1    conda-forge
tzdata                    2021a                he74cb21_1    conda-forge
ucrt                      10.0.20348.0         h57928b3_0    conda-forge
vc                        14.2                 hb210afc_5    conda-forge
vs2015_runtime            14.29.30037          h902a5da_5    conda-forge
wheel                     0.36.2             pyhd3deb0d_0    conda-forge
wincertstore              0.2             py39hcbf5309_1006    conda-forge
zlib                      1.2.11            h62dcd97_1010    conda-forge

You can see here that packages numba and llvmlite mentioned in your conflict error report are not part of the ovito installation.

zhukun Zhou

3 Posts

#3 · July 31, 2021, 4:25 pm

Quote from zhukun Zhou on July 31, 2021, 4:25 pm
Hi Alexander,

I got a clean conda. but it is not working. Here is the conda list

# packages in environment at C:\ProgramData\Anaconda3:
#
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py38_0
alabaster 0.7.12 pyhd3eb1b0_0
anaconda 2021.05 py38_0
anaconda-client 1.7.2 py38_0
anaconda-navigator 2.0.3 py38_0
anaconda-project 0.9.1 pyhd3eb1b0_1
anyio 2.2.0 py38haa95532_2
appdirs 1.4.4 py_0
argh 0.26.2 py38_0
argon2-cffi 20.1.0 py38h2bbff1b_1
asn1crypto 1.4.0 py_0
astroid 2.5 py38haa95532_1
astropy 4.2.1 py38h2bbff1b_1
async_generator 1.10 pyhd3eb1b0_0
atomicwrites 1.4.0 py_0
attrs 20.3.0 pyhd3eb1b0_0
autopep8 1.5.6 pyhd3eb1b0_0
babel 2.9.0 pyhd3eb1b0_0
backcall 0.2.0 pyhd3eb1b0_0
backports 1.0 pyhd3eb1b0_2
backports.functools_lru_cache 1.6.4 pyhd3eb1b0_0
backports.shutil_get_terminal_size 1.0.0 pyhd3eb1b0_3
backports.tempfile 1.0 pyhd3eb1b0_1
backports.weakref 1.0.post1 py_1
bcrypt 3.2.0 py38he774522_0
beautifulsoup4 4.9.3 pyha847dfd_0
bitarray 1.9.2 py38h2bbff1b_1
bkcharts 0.2 py38_0
black 19.10b0 py_0
blas 1.0 mkl
bleach 3.3.0 pyhd3eb1b0_0
blosc 1.21.0 h19a0ad4_0
bokeh 2.3.2 py38haa95532_0
boto 2.49.0 py38_0
bottleneck 1.3.2 py38h2a96729_1
brotli 1.0.9 ha925a31_2
brotlipy 0.7.0 py38h2bbff1b_1003
bzip2 1.0.8 he774522_0
ca-certificates 2021.4.13 haa95532_1
certifi 2020.12.5 py38haa95532_0
cffi 1.14.5 py38hcd4344a_0
chardet 4.0.0 py38haa95532_1003
charls 2.2.0 h6c2663c_0
click 7.1.2 pyhd3eb1b0_0
cloudpickle 1.6.0 py_0
clyent 1.2.2 py38_1
colorama 0.4.4 pyhd3eb1b0_0
comtypes 1.1.9 py38haa95532_1002
conda 4.10.1 py38haa95532_1
conda-build 3.21.4 py38haa95532_0
conda-content-trust 0.1.1 pyhd3eb1b0_0
conda-env 2.6.0 1
conda-package-handling 1.7.3 py38h8cc25b3_1
conda-repo-cli 1.0.4 pyhd3eb1b0_0
conda-token 0.3.0 pyhd3eb1b0_0
conda-verify 3.4.2 py_1
console_shortcut 0.1.1 4
contextlib2 0.6.0.post1 py_0
cryptography 3.4.7 py38h71e12ea_0
curl 7.71.1 h2a8f88b_1
cycler 0.10.0 py38_0
cython 0.29.23 py38hd77b12b_0
cytoolz 0.11.0 py38he774522_0
dask 2021.4.0 pyhd3eb1b0_0
dask-core 2021.4.0 pyhd3eb1b0_0
decorator 5.0.6 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
diff-match-patch 20200713 py_0
distributed 2021.4.0 py38haa95532_0
docutils 0.17 py38haa95532_1
entrypoints 0.3 py38_0
et_xmlfile 1.0.1 py_1001
fastcache 1.1.0 py38he774522_0
filelock 3.0.12 pyhd3eb1b0_1
flake8 3.9.0 pyhd3eb1b0_0
flask 1.1.2 pyhd3eb1b0_0
freetype 2.10.4 hd328e21_0
fsspec 0.9.0 pyhd3eb1b0_0
future 0.18.2 py38_1
get_terminal_size 1.0.0 h38e98db_0
gevent 21.1.2 py38h2bbff1b_1
giflib 5.2.1 h62dcd97_0
glob2 0.7 pyhd3eb1b0_0
greenlet 1.0.0 py38hd77b12b_2
h5py 2.10.0 py38h5e291fa_0
hdf5 1.10.4 h7ebc959_0
heapdict 1.0.1 py_0
html5lib 1.1 py_0
icc_rt 2019.0.0 h0cc432a_1
icu 58.2 ha925a31_3
idna 2.10 pyhd3eb1b0_0
imagecodecs 2021.3.31 py38h5da4933_0
imageio 2.9.0 pyhd3eb1b0_0
imagesize 1.2.0 pyhd3eb1b0_0
importlib-metadata 3.10.0 py38haa95532_0
importlib_metadata 3.10.0 hd3eb1b0_0
iniconfig 1.1.1 pyhd3eb1b0_0
intel-openmp 2021.2.0 haa95532_616
intervaltree 3.1.0 py_0
ipykernel 5.3.4 py38h5ca1d4c_0
ipython 7.22.0 py38hd4e2768_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
ipywidgets 7.6.3 pyhd3eb1b0_1
isort 5.8.0 pyhd3eb1b0_0
itsdangerous 1.1.0 pyhd3eb1b0_0
jdcal 1.4.1 py_0
jedi 0.17.2 py38haa95532_1
jinja2 2.11.3 pyhd3eb1b0_0
joblib 1.0.1 pyhd3eb1b0_0
jpeg 9b hb83a4c4_2
json5 0.9.5 py_0
jsonschema 3.2.0 py_2
jupyter 1.0.0 py38_7
jupyter-packaging 0.7.12 pyhd3eb1b0_0
jupyter_client 6.1.12 pyhd3eb1b0_0
jupyter_console 6.4.0 pyhd3eb1b0_0
jupyter_core 4.7.1 py38haa95532_0
jupyter_server 1.4.1 py38haa95532_0
jupyterlab 3.0.14 pyhd3eb1b0_1
jupyterlab_pygments 0.1.2 py_0
jupyterlab_server 2.4.0 pyhd3eb1b0_0
jupyterlab_widgets 1.0.0 pyhd3eb1b0_1
keyring 22.3.0 py38haa95532_0
kiwisolver 1.3.1 py38hd77b12b_0
krb5 1.18.2 hc04afaa_0
lazy-object-proxy 1.6.0 py38h2bbff1b_0
lcms2 2.12 h83e58a3_0
lerc 2.2.1 hd77b12b_0
libaec 1.0.4 h33f27b4_1
libarchive 3.4.2 h5e25573_0
libcurl 7.71.1 h2a8f88b_1
libdeflate 1.7 h2bbff1b_5
libiconv 1.15 h1df5818_7
liblief 0.10.1 ha925a31_0
libpng 1.6.37 h2a8f88b_0
libsodium 1.0.18 h62dcd97_0
libspatialindex 1.9.3 h6c2663c_0
libssh2 1.9.0 h7a1dbc1_1
libtiff 4.2.0 hd0e1b90_0
libxml2 2.9.10 hb89e7f3_3
libxslt 1.1.34 he774522_0
libzopfli 1.0.3 ha925a31_0
llvmlite 0.36.0 py38h34b8924_4
locket 0.2.1 py38haa95532_1
lxml 4.6.3 py38h9b66d53_0
lz4-c 1.9.3 h2bbff1b_0
lzo 2.10 he774522_2
m2w64-gcc-libgfortran 5.3.0 6
m2w64-gcc-libs 5.3.0 7
m2w64-gcc-libs-core 5.3.0 7
m2w64-gmp 6.1.0 2
m2w64-libwinpthread-git 5.0.0.4634.697f757 2
markupsafe 1.1.1 py38he774522_0
matplotlib 3.3.4 py38haa95532_0
matplotlib-base 3.3.4 py38h49ac443_0
mccabe 0.6.1 py38_1
menuinst 1.4.16 py38he774522_1
mistune 0.8.4 py38he774522_1000
mkl 2021.2.0 haa95532_296
mkl-service 2.3.0 py38h2bbff1b_1
mkl_fft 1.3.0 py38h277e83a_2
mkl_random 1.2.1 py38hf11a4ad_2
mock 4.0.3 pyhd3eb1b0_0
more-itertools 8.7.0 pyhd3eb1b0_0
mpmath 1.2.1 py38haa95532_0
msgpack-python 1.0.2 py38h59b6b97_1
msys2-conda-epoch 20160418 1
multipledispatch 0.6.0 py38_0
mypy_extensions 0.4.3 py38_0
navigator-updater 0.2.1 py38_0
nbclassic 0.2.6 pyhd3eb1b0_0
nbclient 0.5.3 pyhd3eb1b0_0
nbconvert 6.0.7 py38_0
nbformat 5.1.3 pyhd3eb1b0_0
nest-asyncio 1.5.1 pyhd3eb1b0_0
networkx 2.5 py_0
nltk 3.6.1 pyhd3eb1b0_0
nose 1.3.7 pyhd3eb1b0_1006
notebook 6.3.0 py38haa95532_0
numba 0.53.1 py38hf11a4ad_0
numexpr 2.7.3 py38hb80d3ca_1
numpy 1.20.1 py38h34a8a5c_0
numpy-base 1.20.1 py38haf7ebc8_0
numpydoc 1.1.0 pyhd3eb1b0_1
olefile 0.46 py_0
openjpeg 2.3.0 h5ec785f_1
openpyxl 3.0.7 pyhd3eb1b0_0
openssl 1.1.1k h2bbff1b_0
packaging 20.9 pyhd3eb1b0_0
pandas 1.2.4 py38hd77b12b_0
pandoc 2.12 haa95532_0
pandocfilters 1.4.3 py38haa95532_1
paramiko 2.7.2 py_0
parso 0.7.0 py_0
partd 1.2.0 pyhd3eb1b0_0
path 15.1.2 py38haa95532_0
path.py 12.5.0 0
pathlib2 2.3.5 py38haa95532_2
pathspec 0.7.0 py_0
patsy 0.5.1 py38_0
pep8 1.7.1 py38_0
pexpect 4.8.0 pyhd3eb1b0_3
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 8.2.0 py38h4fa10fc_0
pip 21.0.1 py38haa95532_0
pkginfo 1.7.0 py38haa95532_0
pluggy 0.13.1 py38haa95532_0
ply 3.11 py38_0
powershell_shortcut 0.0.1 3
prometheus_client 0.10.1 pyhd3eb1b0_0
prompt-toolkit 3.0.17 pyh06a4308_0
prompt_toolkit 3.0.17 hd3eb1b0_0
psutil 5.8.0 py38h2bbff1b_1
ptyprocess 0.7.0 pyhd3eb1b0_2
py 1.10.0 pyhd3eb1b0_0
py-lief 0.10.1 py38ha925a31_0
pycodestyle 2.6.0 pyhd3eb1b0_0
pycosat 0.6.3 py38h2bbff1b_0
pycparser 2.20 py_2
pycurl 7.43.0.6 py38h7a1dbc1_0
pydocstyle 6.0.0 pyhd3eb1b0_0
pyerfa 1.7.3 py38h2bbff1b_0
pyflakes 2.2.0 pyhd3eb1b0_0
pygments 2.8.1 pyhd3eb1b0_0
pylint 2.7.4 py38haa95532_1
pyls-black 0.4.6 hd3eb1b0_0
pyls-spyder 0.3.2 pyhd3eb1b0_0
pynacl 1.4.0 py38h62dcd97_1
pyodbc 4.0.30 py38ha925a31_0
pyopenssl 20.0.1 pyhd3eb1b0_1
pyparsing 2.4.7 pyhd3eb1b0_0
pyqt 5.9.2 py38ha925a31_4
pyreadline 2.1 py38_1
pyrsistent 0.17.3 py38he774522_0
pysocks 1.7.1 py38haa95532_0
pytables 3.6.1 py38ha5be198_0
pytest 6.2.3 py38haa95532_2
python 3.8.8 hdbf39b2_5
python-dateutil 2.8.1 pyhd3eb1b0_0
python-jsonrpc-server 0.4.0 py_0
python-language-server 0.36.2 pyhd3eb1b0_0
python-libarchive-c 2.9 pyhd3eb1b0_1
pytz 2021.1 pyhd3eb1b0_0
pywavelets 1.1.1 py38he774522_2
pywin32 227 py38he774522_1
pywin32-ctypes 0.2.0 py38_1000
pywinpty 0.5.7 py38_0
pyyaml 5.4.1 py38h2bbff1b_1
pyzmq 20.0.0 py38hd77b12b_1
qdarkstyle 2.8.1 py_0
qt 5.9.7 vc14h73c81de_0
qtawesome 1.0.2 pyhd3eb1b0_0
qtconsole 5.0.3 pyhd3eb1b0_0
qtpy 1.9.0 py_0
regex 2021.4.4 py38h2bbff1b_0
requests 2.25.1 pyhd3eb1b0_0
rope 0.18.0 py_0
rtree 0.9.7 py38h2eaa2aa_1
ruamel_yaml 0.15.100 py38h2bbff1b_0
scikit-image 0.18.1 py38hf11a4ad_0
scikit-learn 0.24.1 py38hf11a4ad_0
scipy 1.6.2 py38h66253e8_1
seaborn 0.11.1 pyhd3eb1b0_0
send2trash 1.5.0 pyhd3eb1b0_1
setuptools 52.0.0 py38haa95532_0
simplegeneric 0.8.1 py38_2
singledispatch 3.6.1 pyhd3eb1b0_1001
sip 4.19.13 py38ha925a31_0
six 1.15.0 py38haa95532_0
snappy 1.1.8 h33f27b4_0
sniffio 1.2.0 py38haa95532_1
snowballstemmer 2.1.0 pyhd3eb1b0_0
sortedcollections 2.1.0 pyhd3eb1b0_0
sortedcontainers 2.3.0 pyhd3eb1b0_0
soupsieve 2.2.1 pyhd3eb1b0_0
sphinx 4.0.1 pyhd3eb1b0_0
sphinxcontrib 1.0 py38_1
sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-htmlhelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0
sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-serializinghtml 1.1.4 pyhd3eb1b0_0
sphinxcontrib-websupport 1.2.4 py_0
spyder 4.2.5 py38haa95532_0
spyder-kernels 1.10.2 py38haa95532_0
sqlalchemy 1.4.7 py38h2bbff1b_0
sqlite 3.35.4 h2bbff1b_0
statsmodels 0.12.2 py38h2bbff1b_0
sympy 1.8 py38haa95532_0
tbb 2020.3 h74a9793_0
tblib 1.7.0 py_0
terminado 0.9.4 py38haa95532_0
testpath 0.4.4 pyhd3eb1b0_0
textdistance 4.2.1 pyhd3eb1b0_0
threadpoolctl 2.1.0 pyh5ca1d4c_0
three-merge 0.1.1 pyhd3eb1b0_0
tifffile 2021.4.8 pyhd3eb1b0_2
tk 8.6.10 he774522_0
toml 0.10.2 pyhd3eb1b0_0
toolz 0.11.1 pyhd3eb1b0_0
tornado 6.1 py38h2bbff1b_0
tqdm 4.59.0 pyhd3eb1b0_1
traitlets 5.0.5 pyhd3eb1b0_0
typed-ast 1.4.2 py38h2bbff1b_1
typing_extensions 3.7.4.3 pyha847dfd_0
ujson 4.0.2 py38hd77b12b_0
unicodecsv 0.14.1 py38_0
urllib3 1.26.4 pyhd3eb1b0_0
vc 14.2 h21ff451_1
vs2015_runtime 14.27.29016 h5e58377_2
watchdog 1.0.2 py38haa95532_1
wcwidth 0.2.5 py_0
webencodings 0.5.1 py38_1
werkzeug 1.0.1 pyhd3eb1b0_0
wheel 0.36.2 pyhd3eb1b0_0
widgetsnbextension 3.5.1 py38_0
win_inet_pton 1.1.0 py38haa95532_0
win_unicode_console 0.5 py38_0
wincertstore 0.2 py38_0
winpty 0.4.3 4
wrapt 1.12.1 py38he774522_1
xlrd 2.0.1 pyhd3eb1b0_0
xlsxwriter 1.3.8 pyhd3eb1b0_0
xlwings 0.23.0 py38haa95532_0
xlwt 1.3.0 py38_0
xmltodict 0.12.0 py_0
xz 5.2.5 h62dcd97_0
yaml 0.2.5 he774522_0
yapf 0.31.0 pyhd3eb1b0_0
zeromq 4.3.3 ha925a31_3
zfp 0.5.5 hd77b12b_6
zict 2.0.0 pyhd3eb1b0_0
zipp 3.4.1 pyhd3eb1b0_0
zlib 1.2.11 h62dcd97_4
zope 1.0 py38_1
zope.event 4.5.0 py38_0
zope.interface 5.3.0 py38h2bbff1b_0
zstd 1.4.5 h04227a9_0

Hi Alexander,

I got a clean conda. but it is not working. Here is the conda list

# packages in environment at C:\ProgramData\Anaconda3:
#
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py38_0
alabaster 0.7.12 pyhd3eb1b0_0
anaconda 2021.05 py38_0
anaconda-client 1.7.2 py38_0
anaconda-navigator 2.0.3 py38_0
anaconda-project 0.9.1 pyhd3eb1b0_1
anyio 2.2.0 py38haa95532_2
appdirs 1.4.4 py_0
argh 0.26.2 py38_0
argon2-cffi 20.1.0 py38h2bbff1b_1
asn1crypto 1.4.0 py_0
astroid 2.5 py38haa95532_1
astropy 4.2.1 py38h2bbff1b_1
async_generator 1.10 pyhd3eb1b0_0
atomicwrites 1.4.0 py_0
attrs 20.3.0 pyhd3eb1b0_0
autopep8 1.5.6 pyhd3eb1b0_0
babel 2.9.0 pyhd3eb1b0_0
backcall 0.2.0 pyhd3eb1b0_0
backports 1.0 pyhd3eb1b0_2
backports.functools_lru_cache 1.6.4 pyhd3eb1b0_0
backports.shutil_get_terminal_size 1.0.0 pyhd3eb1b0_3
backports.tempfile 1.0 pyhd3eb1b0_1
backports.weakref 1.0.post1 py_1
bcrypt 3.2.0 py38he774522_0
beautifulsoup4 4.9.3 pyha847dfd_0
bitarray 1.9.2 py38h2bbff1b_1
bkcharts 0.2 py38_0
black 19.10b0 py_0
blas 1.0 mkl
bleach 3.3.0 pyhd3eb1b0_0
blosc 1.21.0 h19a0ad4_0
bokeh 2.3.2 py38haa95532_0
boto 2.49.0 py38_0
bottleneck 1.3.2 py38h2a96729_1
brotli 1.0.9 ha925a31_2
brotlipy 0.7.0 py38h2bbff1b_1003
bzip2 1.0.8 he774522_0
ca-certificates 2021.4.13 haa95532_1
certifi 2020.12.5 py38haa95532_0
cffi 1.14.5 py38hcd4344a_0
chardet 4.0.0 py38haa95532_1003
charls 2.2.0 h6c2663c_0
click 7.1.2 pyhd3eb1b0_0
cloudpickle 1.6.0 py_0
clyent 1.2.2 py38_1
colorama 0.4.4 pyhd3eb1b0_0
comtypes 1.1.9 py38haa95532_1002
conda 4.10.1 py38haa95532_1
conda-build 3.21.4 py38haa95532_0
conda-content-trust 0.1.1 pyhd3eb1b0_0
conda-env 2.6.0 1
conda-package-handling 1.7.3 py38h8cc25b3_1
conda-repo-cli 1.0.4 pyhd3eb1b0_0
conda-token 0.3.0 pyhd3eb1b0_0
conda-verify 3.4.2 py_1
console_shortcut 0.1.1 4
contextlib2 0.6.0.post1 py_0
cryptography 3.4.7 py38h71e12ea_0
curl 7.71.1 h2a8f88b_1
cycler 0.10.0 py38_0
cython 0.29.23 py38hd77b12b_0
cytoolz 0.11.0 py38he774522_0
dask 2021.4.0 pyhd3eb1b0_0
dask-core 2021.4.0 pyhd3eb1b0_0
decorator 5.0.6 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
diff-match-patch 20200713 py_0
distributed 2021.4.0 py38haa95532_0
docutils 0.17 py38haa95532_1
entrypoints 0.3 py38_0
et_xmlfile 1.0.1 py_1001
fastcache 1.1.0 py38he774522_0
filelock 3.0.12 pyhd3eb1b0_1
flake8 3.9.0 pyhd3eb1b0_0
flask 1.1.2 pyhd3eb1b0_0
freetype 2.10.4 hd328e21_0
fsspec 0.9.0 pyhd3eb1b0_0
future 0.18.2 py38_1
get_terminal_size 1.0.0 h38e98db_0
gevent 21.1.2 py38h2bbff1b_1
giflib 5.2.1 h62dcd97_0
glob2 0.7 pyhd3eb1b0_0
greenlet 1.0.0 py38hd77b12b_2
h5py 2.10.0 py38h5e291fa_0
hdf5 1.10.4 h7ebc959_0
heapdict 1.0.1 py_0
html5lib 1.1 py_0
icc_rt 2019.0.0 h0cc432a_1
icu 58.2 ha925a31_3
idna 2.10 pyhd3eb1b0_0
imagecodecs 2021.3.31 py38h5da4933_0
imageio 2.9.0 pyhd3eb1b0_0
imagesize 1.2.0 pyhd3eb1b0_0
importlib-metadata 3.10.0 py38haa95532_0
importlib_metadata 3.10.0 hd3eb1b0_0
iniconfig 1.1.1 pyhd3eb1b0_0
intel-openmp 2021.2.0 haa95532_616
intervaltree 3.1.0 py_0
ipykernel 5.3.4 py38h5ca1d4c_0
ipython 7.22.0 py38hd4e2768_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
ipywidgets 7.6.3 pyhd3eb1b0_1
isort 5.8.0 pyhd3eb1b0_0
itsdangerous 1.1.0 pyhd3eb1b0_0
jdcal 1.4.1 py_0
jedi 0.17.2 py38haa95532_1
jinja2 2.11.3 pyhd3eb1b0_0
joblib 1.0.1 pyhd3eb1b0_0
jpeg 9b hb83a4c4_2
json5 0.9.5 py_0
jsonschema 3.2.0 py_2
jupyter 1.0.0 py38_7
jupyter-packaging 0.7.12 pyhd3eb1b0_0
jupyter_client 6.1.12 pyhd3eb1b0_0
jupyter_console 6.4.0 pyhd3eb1b0_0
jupyter_core 4.7.1 py38haa95532_0
jupyter_server 1.4.1 py38haa95532_0
jupyterlab 3.0.14 pyhd3eb1b0_1
jupyterlab_pygments 0.1.2 py_0
jupyterlab_server 2.4.0 pyhd3eb1b0_0
jupyterlab_widgets 1.0.0 pyhd3eb1b0_1
keyring 22.3.0 py38haa95532_0
kiwisolver 1.3.1 py38hd77b12b_0
krb5 1.18.2 hc04afaa_0
lazy-object-proxy 1.6.0 py38h2bbff1b_0
lcms2 2.12 h83e58a3_0
lerc 2.2.1 hd77b12b_0
libaec 1.0.4 h33f27b4_1
libarchive 3.4.2 h5e25573_0
libcurl 7.71.1 h2a8f88b_1
libdeflate 1.7 h2bbff1b_5
libiconv 1.15 h1df5818_7
liblief 0.10.1 ha925a31_0
libpng 1.6.37 h2a8f88b_0
libsodium 1.0.18 h62dcd97_0
libspatialindex 1.9.3 h6c2663c_0
libssh2 1.9.0 h7a1dbc1_1
libtiff 4.2.0 hd0e1b90_0
libxml2 2.9.10 hb89e7f3_3
libxslt 1.1.34 he774522_0
libzopfli 1.0.3 ha925a31_0
llvmlite 0.36.0 py38h34b8924_4
locket 0.2.1 py38haa95532_1
lxml 4.6.3 py38h9b66d53_0
lz4-c 1.9.3 h2bbff1b_0
lzo 2.10 he774522_2
m2w64-gcc-libgfortran 5.3.0 6
m2w64-gcc-libs 5.3.0 7
m2w64-gcc-libs-core 5.3.0 7
m2w64-gmp 6.1.0 2
m2w64-libwinpthread-git 5.0.0.4634.697f757 2
markupsafe 1.1.1 py38he774522_0
matplotlib 3.3.4 py38haa95532_0
matplotlib-base 3.3.4 py38h49ac443_0
mccabe 0.6.1 py38_1
menuinst 1.4.16 py38he774522_1
mistune 0.8.4 py38he774522_1000
mkl 2021.2.0 haa95532_296
mkl-service 2.3.0 py38h2bbff1b_1
mkl_fft 1.3.0 py38h277e83a_2
mkl_random 1.2.1 py38hf11a4ad_2
mock 4.0.3 pyhd3eb1b0_0
more-itertools 8.7.0 pyhd3eb1b0_0
mpmath 1.2.1 py38haa95532_0
msgpack-python 1.0.2 py38h59b6b97_1
msys2-conda-epoch 20160418 1
multipledispatch 0.6.0 py38_0
mypy_extensions 0.4.3 py38_0
navigator-updater 0.2.1 py38_0
nbclassic 0.2.6 pyhd3eb1b0_0
nbclient 0.5.3 pyhd3eb1b0_0
nbconvert 6.0.7 py38_0
nbformat 5.1.3 pyhd3eb1b0_0
nest-asyncio 1.5.1 pyhd3eb1b0_0
networkx 2.5 py_0
nltk 3.6.1 pyhd3eb1b0_0
nose 1.3.7 pyhd3eb1b0_1006
notebook 6.3.0 py38haa95532_0
numba 0.53.1 py38hf11a4ad_0
numexpr 2.7.3 py38hb80d3ca_1
numpy 1.20.1 py38h34a8a5c_0
numpy-base 1.20.1 py38haf7ebc8_0
numpydoc 1.1.0 pyhd3eb1b0_1
olefile 0.46 py_0
openjpeg 2.3.0 h5ec785f_1
openpyxl 3.0.7 pyhd3eb1b0_0
openssl 1.1.1k h2bbff1b_0
packaging 20.9 pyhd3eb1b0_0
pandas 1.2.4 py38hd77b12b_0
pandoc 2.12 haa95532_0
pandocfilters 1.4.3 py38haa95532_1
paramiko 2.7.2 py_0
parso 0.7.0 py_0
partd 1.2.0 pyhd3eb1b0_0
path 15.1.2 py38haa95532_0
path.py 12.5.0 0
pathlib2 2.3.5 py38haa95532_2
pathspec 0.7.0 py_0
patsy 0.5.1 py38_0
pep8 1.7.1 py38_0
pexpect 4.8.0 pyhd3eb1b0_3
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 8.2.0 py38h4fa10fc_0
pip 21.0.1 py38haa95532_0
pkginfo 1.7.0 py38haa95532_0
pluggy 0.13.1 py38haa95532_0
ply 3.11 py38_0
powershell_shortcut 0.0.1 3
prometheus_client 0.10.1 pyhd3eb1b0_0
prompt-toolkit 3.0.17 pyh06a4308_0
prompt_toolkit 3.0.17 hd3eb1b0_0
psutil 5.8.0 py38h2bbff1b_1
ptyprocess 0.7.0 pyhd3eb1b0_2
py 1.10.0 pyhd3eb1b0_0
py-lief 0.10.1 py38ha925a31_0
pycodestyle 2.6.0 pyhd3eb1b0_0
pycosat 0.6.3 py38h2bbff1b_0
pycparser 2.20 py_2
pycurl 7.43.0.6 py38h7a1dbc1_0
pydocstyle 6.0.0 pyhd3eb1b0_0
pyerfa 1.7.3 py38h2bbff1b_0
pyflakes 2.2.0 pyhd3eb1b0_0
pygments 2.8.1 pyhd3eb1b0_0
pylint 2.7.4 py38haa95532_1
pyls-black 0.4.6 hd3eb1b0_0
pyls-spyder 0.3.2 pyhd3eb1b0_0
pynacl 1.4.0 py38h62dcd97_1
pyodbc 4.0.30 py38ha925a31_0
pyopenssl 20.0.1 pyhd3eb1b0_1
pyparsing 2.4.7 pyhd3eb1b0_0
pyqt 5.9.2 py38ha925a31_4
pyreadline 2.1 py38_1
pyrsistent 0.17.3 py38he774522_0
pysocks 1.7.1 py38haa95532_0
pytables 3.6.1 py38ha5be198_0
pytest 6.2.3 py38haa95532_2
python 3.8.8 hdbf39b2_5
python-dateutil 2.8.1 pyhd3eb1b0_0
python-jsonrpc-server 0.4.0 py_0
python-language-server 0.36.2 pyhd3eb1b0_0
python-libarchive-c 2.9 pyhd3eb1b0_1
pytz 2021.1 pyhd3eb1b0_0
pywavelets 1.1.1 py38he774522_2
pywin32 227 py38he774522_1
pywin32-ctypes 0.2.0 py38_1000
pywinpty 0.5.7 py38_0
pyyaml 5.4.1 py38h2bbff1b_1
pyzmq 20.0.0 py38hd77b12b_1
qdarkstyle 2.8.1 py_0
qt 5.9.7 vc14h73c81de_0
qtawesome 1.0.2 pyhd3eb1b0_0
qtconsole 5.0.3 pyhd3eb1b0_0
qtpy 1.9.0 py_0
regex 2021.4.4 py38h2bbff1b_0
requests 2.25.1 pyhd3eb1b0_0
rope 0.18.0 py_0
rtree 0.9.7 py38h2eaa2aa_1
ruamel_yaml 0.15.100 py38h2bbff1b_0
scikit-image 0.18.1 py38hf11a4ad_0
scikit-learn 0.24.1 py38hf11a4ad_0
scipy 1.6.2 py38h66253e8_1
seaborn 0.11.1 pyhd3eb1b0_0
send2trash 1.5.0 pyhd3eb1b0_1
setuptools 52.0.0 py38haa95532_0
simplegeneric 0.8.1 py38_2
singledispatch 3.6.1 pyhd3eb1b0_1001
sip 4.19.13 py38ha925a31_0
six 1.15.0 py38haa95532_0
snappy 1.1.8 h33f27b4_0
sniffio 1.2.0 py38haa95532_1
snowballstemmer 2.1.0 pyhd3eb1b0_0
sortedcollections 2.1.0 pyhd3eb1b0_0
sortedcontainers 2.3.0 pyhd3eb1b0_0
soupsieve 2.2.1 pyhd3eb1b0_0
sphinx 4.0.1 pyhd3eb1b0_0
sphinxcontrib 1.0 py38_1
sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-htmlhelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0
sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-serializinghtml 1.1.4 pyhd3eb1b0_0
sphinxcontrib-websupport 1.2.4 py_0
spyder 4.2.5 py38haa95532_0
spyder-kernels 1.10.2 py38haa95532_0
sqlalchemy 1.4.7 py38h2bbff1b_0
sqlite 3.35.4 h2bbff1b_0
statsmodels 0.12.2 py38h2bbff1b_0
sympy 1.8 py38haa95532_0
tbb 2020.3 h74a9793_0
tblib 1.7.0 py_0
terminado 0.9.4 py38haa95532_0
testpath 0.4.4 pyhd3eb1b0_0
textdistance 4.2.1 pyhd3eb1b0_0
threadpoolctl 2.1.0 pyh5ca1d4c_0
three-merge 0.1.1 pyhd3eb1b0_0
tifffile 2021.4.8 pyhd3eb1b0_2
tk 8.6.10 he774522_0
toml 0.10.2 pyhd3eb1b0_0
toolz 0.11.1 pyhd3eb1b0_0
tornado 6.1 py38h2bbff1b_0
tqdm 4.59.0 pyhd3eb1b0_1
traitlets 5.0.5 pyhd3eb1b0_0
typed-ast 1.4.2 py38h2bbff1b_1
typing_extensions 3.7.4.3 pyha847dfd_0
ujson 4.0.2 py38hd77b12b_0
unicodecsv 0.14.1 py38_0
urllib3 1.26.4 pyhd3eb1b0_0
vc 14.2 h21ff451_1
vs2015_runtime 14.27.29016 h5e58377_2
watchdog 1.0.2 py38haa95532_1
wcwidth 0.2.5 py_0
webencodings 0.5.1 py38_1
werkzeug 1.0.1 pyhd3eb1b0_0
wheel 0.36.2 pyhd3eb1b0_0
widgetsnbextension 3.5.1 py38_0
win_inet_pton 1.1.0 py38haa95532_0
win_unicode_console 0.5 py38_0
wincertstore 0.2 py38_0
winpty 0.4.3 4
wrapt 1.12.1 py38he774522_1
xlrd 2.0.1 pyhd3eb1b0_0
xlsxwriter 1.3.8 pyhd3eb1b0_0
xlwings 0.23.0 py38haa95532_0
xlwt 1.3.0 py38_0
xmltodict 0.12.0 py_0
xz 5.2.5 h62dcd97_0
yaml 0.2.5 he774522_0
yapf 0.31.0 pyhd3eb1b0_0
zeromq 4.3.3 ha925a31_3
zfp 0.5.5 hd77b12b_6
zict 2.0.0 pyhd3eb1b0_0
zipp 3.4.1 pyhd3eb1b0_0
zlib 1.2.11 h62dcd97_4
zope 1.0 py38_1
zope.event 4.5.0 py38_0
zope.interface 5.3.0 py38h2bbff1b_0
zstd 1.4.5 h04227a9_0

zhukun Zhou

3 Posts

#4 · July 31, 2021, 4:49 pm

After I install it in a new environment. It works now. Thank you very much

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Unable to install OVITO by conda

新的OVITO微信频道!New for our users in China: OVITO on WeChat

新的OVITO微信频道!
New for our users in China: OVITO on WeChat